Jean-Loup Faulon's Lab Publication List

Jean-Loup Faulon's Lab Publications 

  1. Fehér, T, Planson, AG, Carbonell, P, Fernández-Castané, A, Grigoras, I, Dariy, E, Perret, A, Faulon, J.L. Validation of RetroPath, a Computer Aided Design Tool for Metabolic Pathway Engineering. Biotechnol J., in press PMID: 25224453, 2014.
  2. Pauthenier, C., Faulon, J.L. PrecisePrimer: an easy to use webserver for designing PCR primers for DNA library cloning and DNA Shuffling. Nucleic Acids Research, in press, 2014.
  3. Castane, A., Ferer, T. Carbonnell. P, Faulon, J.L. Computer-aided design for metabolic engineering. Journal of Biotechnology, in press, 2014.
  4. Carbonell, P., Parutto, P., Herisson, J., Pandit, S., Faulon, J.L.. XTMS: Pathway Design in an eXTended Metabolic Space. Nucleic Acids Research, in press, 2014.
  5. Carbonell, P., Parutto, P., Baudier, C., Junot, C., Faulon, J.L. Retropath: automated pipeline for embedded metabolic circuits. ACS Synthetic Biology, in press, 2014. (link to journal)
  6. Jaghoori, M.M., Jongmans S.T.Q., de Boer, F., Peironcely, J., Faulon, J.L., Reijmers, T., Hankemeier, T. PMG: Multi-core metabolite identification. Electronic Notes in Theoretical Computer Science, 299: 53-60, 2013. (link to journal)
  7. Carbonell, P., Carlsson, L., Faulon, J.L. Stereo signature molecular descriptor. J Chem Inf Model, 53(4): 887-897, 2013. (link to journal)
  8. Joo, J., Plimpton, S.J., Faulon, J.L. Statistical Ensemble Analysis for Simulating Extrinsic Noise-driven Response in NF-kappaB Signaling Network. BMC Systems Biology, 7:45, 2013. (link to journal)
  9. Martiny, V.Y., Carbonell, P., Lagorce, D., Villoutreix, B.O., Moroy, G., Miteva, M.A. In silico mechanistic profiling to probe small molecule binding to sulfotransferases. PLoS ONE, 8(9): e73587, 2013. (link to journal)
  10. Trosset, J.Y, Carbonell, P. Synergistic synthetic biology: units in concert. Frontiers in Synthetic Biology , 1:11, 2013. (link to journal)
  11. Xu, S., Ying, H., Carbonell, P., Hu, J., Lee, C. Wu, W. Fuzzy logic applications in control theory and systems biology. Advances in Fuzzy Systems, 504728, 2013. (link to journal)
  12. Carbonell, P., Planson, A.G., Faulon, J.L. Retrosynthetic design of heterologous pathways. Methods in Molecular Biology, 2013,985:149-73. (link to journal)
  13. Pauthenier, C., Carbonell, P., Faulon, J.L. La conception rationnelle de ferments biologiques : comment concevoir un micro-organisme pour produire un composé chimique spécifique. L'Actualité Chimique, 375: 30-36, 2013.
  14. Pauthenier, C., Faulon, J.L. Ingénierie métabolique et biologie de synthèse. Techniques de l'Ingénieur, BIO800, 2013.
  15. Pauthenier, C., Faulon, J.L. Composés produits par ingénierie métabolique. Techniques de l'Ingénieur, BIO801, 2013.
  16. Planson, A.G., Carbonell, P., Grigoras, I., Faulon, J.L. A retrosynthetic biology approach to therapeutics: from conception to delivery. Current Opinion in Biotechnology, 2012, 23:948-956. (link to journal)
  17. Carbonell, P., Fichera, D., Pandit, S.B., Faulon, J.L. Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms. BMC Systems Biology, 2012, 6:10. (link to journal)
  18. Planson A.G., Carbonell P., Paillard E., Pollet N., Faulon J.L. Compound toxicity screening and structure-activity relationship modeling in Escherichia coli. Biotechnology and Bioengineering, 2012, 109(3):846-850. (link to journal)
  19. Peironcely J.E., Rojas-Chertó M., Fichera D., Reijmers T., Coulier L., Faulon J.L., Hankemeier, T. OMG: open molecule generator. J. Cheminf , 2012, 4:21 . (link to journal)
  20. Misra M. , Martin S., Faulon J.L. Graphs: Flexible Representations of Molecular Structures and Biological Networks, in Computational Approaches in Cheminformatics and Bioinformatics, Guha R., Bender, A. Edts, Wiley, 2012. (link to journal)
  21. Carbonell P, Lecointre G, Faulon JL. Origins of specificity and promiscuity in metabolic networks. Journal of Biological Chemistry, 2011, 286:43994-44004. (link to journal)
  22. Carbonell P., Planson A.G., Fichera D., Faulon J.L. A retrosynthetic biology approach to metabolic pathway design for therapeutic production. BMC Systems Biology, 2011, 5:122. (link to journal)
  23. Misra, M, Andrienko, D, Baumeier, B, Faulon, JL, von Lilienfeld, OA. Toward Quantitative Structure-Property Relationships for Charge Transfer Rates of Polycyclic Aromatic Hydrocarbons. Journal of Chemical Theory and Computation, 2011, 7(7): 2094-2103. (link to journal)
  24. Jaramillo, A, Faulon, JL. Synthetic Biology - applying new paradigms at the interface of fundamental research and innovation. Biotechnology Journal, 2011, 6(7): 766-767. (link to journal)
  25. Planson, AG, Carbonell, P, Grigoras, I, Faulon, JL. Engineering antibiotic production and overcoming bacterial resistance. Biotechnology Journal, 2011, 6(7): 812-825. (link to journal)
  26. Carbonell P, Faulon JL. Molecular signatures-based prediction of enzyme promiscuity. Bioinformatics. 2010 26(16): 2012-2019. [PMID: 20551137] (link to journal)
  27. Faulon, JL, Carbonell, P. Reaction Network Generation,, In Handbook of Chemoinformatics Algorithms. Chapman & Hall/CRC Series in Mathematical & Computational Biology, 2010. ( link to publisher)
  28. Misra, M, Faulon, JL. Algorithms to Store and Retrieve 2D Chemical Structures, In Handbook of Chemoinformatics Algorithms. Chapman & Hall/CRC Series in Mathematical & Computational Biology, 2010. ( link to publisher)
  29. Carbonell P, del Sol A. Methyl side-chain dynamics prediction based on protein structure. Bioinformatics. 2009 25(19):2552-8. [PMID: 19648137] (link to journal) 
  30. Carbonell P, Nussinov R, del Sol A. Energetic determinants of protein binding specificity: insights into protein interaction networks. Proteomics. 2009 Apr;9(7):1744-53. [PMID: 19253304] (link to journal) 
  31. Weis DC, Visco DP Jr, Faulon JL. Data mining PubChem using a support vector machine with the Signature molecular descriptor: classification of factor XIa inhibitors. J Mol Graph Model. 2008 Nov;27(4):466-75. Epub 2008 Aug 27.[PMID: 18829357]
  32. Faulon JL, Misra M, Martin S, Sale K, Sapra R. Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor. Bioinformatics. 2008 Jan 15;24(2):225-33. Epub 2007 Nov 23. [PMID: 18037612] (link to journal)
  33. Martin S, Brown WM, Faulon JL. Using product kernels to predict protein interactions. Adv Biochem Eng Biotechnol. 2008;110:215-45. Review. [PMID: 17922100]
  34. May E, Leitao A, Faulon JL, Joo J, Misra M, Oprea TI. Understanding virulence mechanisms in M. tuberculosis infection via a circuit-based simulation framework. Conf Proc IEEE Eng Med Biol Soc. 2008;2008:4953-5. [PMID: 19163828]
  35. Sara P. Gaucher, Jeffrey A. Morrow, and Faulon J.L.Use of a Designed Peptide Array to Infer Dissociation Trends for Non-Tryptic Peptides in Quadrupole Ion Trap and Quadrupole Time of Flight Mass Spectrometry, Analytical Chemistry, Oct 15;79(20):7822-30 2007 [PMID: 17854158 ] (link to journal)
  36. Gray G.A. , Williams P.J., Brown W.M., Faulon J.L.,  Sale K. Disparate Data Fusion for Protein Phosphorylation Prediction”, Annals of Operations Research Special Volume on Data Mining, April 2008.
  37. Zhang Z., Martino A., Faulon J.L.. Global analysis of IL-2 responsive genes in murine T Cell, Journal of Interferon & Cytokine Research, 27, 991-995,  2007
  38. Joo J., Plimpton S., Martin S., Swiler L., Slepoy A., Faulon J.L., Sensitivity analysis of  computational model of the NF-κB-IκB-A20 signal transduction network, Annals of NY Academy of Sciences, vol. 1115, pp. 221-239, 2007  [PMID: 17934057]  (link to journal)
  39. Oprea T., Tropsha A., Faulon J.L., Rintoul M.D. Systems Chemical Biology, Nature Chem. Bio., 3, 447-50, 2007 [PMID: 17637771] (link to journal)
  40. Martin S., Zhang Z., Martino A., Faulon J.L. Boolean Dynamics of Genetic Regulatory Networks Inferred from Microarray Time Series Data, Bioinformatics, 23, 866-74, 2007 [PMID: 17267426]  (link to journal)
  41. del Sol A, Carbonell P. The modular organization of domain structures: insights into protein-protein binding. PLoS Comput Biol. 2007 Dec;3(12):e239. [PMID: 18069884] (link to journal)
  42. Brown W. M., Martin S., Rintoul M.D., Faulon J.L. The Signature Molecular Descriptor. 6. Designing Novel Polymers with Targeted Properties, J. Chem. Info. & Model., 46, 826-835, 2006 [PMID: 16563014 ] (link to journal)
  43. Brown W. M., Martin S., Chabarek J.P., Strauss C, Faulon J.L. Prediction of β-Strand Packing Interactions using the Signature Product, Journal of Molecular Modeling,12, 355-361, 2006 [PMID: 16365772] (link to journal)
  44. Martin S., R. D. Carr R.D., Faulon J.L. Random Removal of Edges from Scale Free Graphs, Physica A.37, 870-876, 2006 (link to journal)
  45. Faulon J.L., Visco D, Roe D. Enumerating Molecules. In: Reviews in Computational Chemistry Vol. 21, Lipkowitz K. Edt., Wiley-VCH, 2005 (link to
  46. Faulon J.L. , Brown W.M., Martin S Reverse engineering chemical structures from molecular descriptors: how many solutions? J. Comput Aided Mol Des. 2005 [PMID: 16267694] (link to journal) 
  47. Brown W.M., Faulon J.L., Sale K. A deterministic algorithm for constrained enumeration of transmembrane protein folds. Comput Biol Chem., 29, 143-150, 2005. [PMID: 15833442]. (link to journal)
  48. Weis D., Faulon J.L., Visco D. The Signature Molecular Descriptor. 5. The Design of Hydrofluoroether Foam Blowing Agents Using Inverse-QSAR, Ind. Eng. Chem. Res., 44, 8883-8891, 2005.(link to journal) 
  49. Martin S., Roe D., Faulon J.L. Predicting Protein-Protein Interactions using Signature Products, Bioinformatics, 21, 218-26, 2005. [PMID: 15319262]. (.pdf manuscript). 
  50. Martin S., Brown W.M., Weis D., Kenneke J., Visco D.,  Faulon J.L. Inverse Design of Large Molecules using Linear Diophantine Equations. Proceedings IEEE CSB2005, 4, 2005.
  51. Faulon J.L.,, Zhang Z., Martino A., Timlin J.A., Haaland D.M.,, Martin S., Davidson G.,  May E., Slepoy A. Reverse Engineering Biological Networks: T-cell response to IL-2 stimulation. SANDIA Report 2005- 5238379, Sandia National Laboratories, Albuquerque, NM. (.pdf manuscript). 
  52. Sale K, Faulon J.L., Gray G.A., Schoeniger J.S., Young M.M. Optimal bundling of transmembrane helices using sparse distance constraints. Protein Science, 13, 2613-2627, 2004. [PMID: 15340162]. (.pdf manuscript). 
  53. Martin S, Davidson G, May E, Werner-Washburne M., Faulon J.L.Inferring Genetic Networks from Microarray Data. Proceedings IEEE CSB2004, 3, 566-569, 2004. (.pdf manuscript). 
  54. Faulon J.L., Martin S., Carr RD.  Dynamical Robustness in Gene Regulatory Networks. Proceedings IEEE CSB2004, 3, 626-627, 2004. (.pdf manuscript). 
  55. Diallo M.S, Strachan A., Faulon J.L., Goddard W.A. Properties of Petroleum Geomacromolecules Through Computer Assisted Structure Elucidation and Atomistic Simulations.1. Bulk Arabian Light Asphaltenes, Petroleum Science and Technology, 22, 877-899, 2004. 
  56. Faulon J.L., Collins M., Carr R.D.  The Signature Molecular Descriptor. 4. Canonizing Molecules Using Extended Valence Sequence, J. Chem. Inf. Comput. Sci., 44, 427-436, 2004. [PMID: 15032522].  (.pdf manuscript). 
  57. Churchwell C. J., Rintoul M. D, Martin S., Visco D., Kotu, A., Larson R. S., Sillerud L. O. Brown D. C., Faulon J.L.  The Signature Molecular Descriptor. 3. Inverse Quantitative Structure-Activity Relationship of ICAM-1 Inhibitory Peptides  J. Molecular Graphics & Modelling., 22, 263-273, 2004. [PMID: 15177078]. (.pdf manuscript)
  58. Faulon J.L., Visco D, Roe D. Molecular Structure Enumeration, SANDIA Report 2004-0960, Sandia National Laboratories, Albuquerque, NM., 2004 
  59. Faulon J. L., Visco D. Churchwell, C. J., The Signature Molecular Descriptor. 2. Enumerating Molcules from their Extended Valence Sequences,  J. Chem. Inf. Comput. Sci., 43 (3), 721 -734, 2003. [PMID: 12767130]. (link to journal) 
  60. Faulon J.L., Visco D., Pophale R.S. The Signature Molecular Descriptor. 1. Using Extended Valence Sequences in QSAR and QSPR studies,  J. Chem. Inf. Comput. Sci., 43, 707-720, 2003. [PMID: 12767129]. (link to journal) 
  61. Faulon J.L., Sale K, Young M.M., Exploring the conformational space of membrane protein folds  matching distance constraints, Protein Science, 12, 1750-1761, 2003. [PMID: 12876324]. (.pdf) 
  62. Diallo M.S., Simpson A., Gassman P., Faulon J.L., Johnson Jr. J.H., Goddard W.A., Hatcher P.G. 3-D Structural Modeling of Humic Acids trhough Experimental Characterization, Computer Assisted Structure Elucidation and Atomistic Simulations. 1. Clesea Siol Humic Acid. Environ. Sci. & Technol, 37 (9), 1783 -1793, 2003. [PMID: 12775049]..   (link to journal)
  63. Faulon J.L., Collins M., Carr R.D.  Canonizing Molecules Using Extended Valence Sequence, SANDIA Report 2003-3157, Sandia National Laboratories, Albuquerque , NM. , 2003 
  64. Faulon, J. L., Rintoul M. D., Young, M. M. Constrained Self-Avoiding Walks: Implications for Protein Structure Determination,  J. Phys. A: Gen. Math., 34, 1-20, 2002. (link to journal) 
  65. Faulon J.L., Collins M., Carr R.D.  Canonizing Molecules Using Extended Valence Sequence, SANDIA Report 2003-3157, Sandia National Laboratories, Albuquerque , NM., 2003
  66. Visco D, Pophale R.S., Rintoul, M. D., Faulon J. L.,  Developing a Methodology for an Inverse Quantitative Structure-Activity Relationship Using the Signature Molecular Descriptor, J. Molecular Graphics & Modelling, 20, 429-438, 2002. [PMID: 12071277].(link to journal)
  67. Heffelfinger G.S., Martino A., Gorin A., Xu Y., Rintoul M.D., Geist A. Al-Hashimi, H. M. , Davidson, G.S. , Faulon J.-L. , Frink L.J. , Haaland D. M. , Hart W.E. , Jakobsson E. , Lane T.,  Li M., LoCascio P. , Olken F. , Olman V. , Palenik B. , Plimpton S.J. , Roe D.C. , Samatova N. F. , Shah M. , Shoshoni A. , Strauss C.  , Thomas E.V. , Timlin J.A. , Xu D. Carbon Sequestration in Synechococcus Sp.: From Molecular Machines to Hierarchical Modeling. OMICS 2002, 6, 4, 305-330. [PMID: 12626091] 
  68. Diallo, M.S.; Faulon, J. L., Goddard, W. A. III. ; Johnson, J H. Jr. Binding of Hydrophobic Organic  Compounds to Dissolved Humic Substances: A Predictive Approach Based on Computer Assisted  Structure Elucidation, Atomistic Simulations and Flory-Huggins Solution Theory. In Humic  Substances: Structures, Models and Functions.  Eds. G. Davies and E.A. Ghabbour, Royal Society of  Chemistry, 2001, 221-237. 
  69. Faulon, J. L., Stochastic Generator of Chemical Structure. (4) Building Polymeric Systems with  Specified Properties, J. Comput. Chem., 2001, 22, 580-590. (link to journal)
  70. Faulon, J. L. ; Sault, A. G. Stochastic Generator of Chemical Structure (3) Reaction Network, J.  Chem. Inf. Comput. Sci, 41, 894 -908, 2001. [PMID: 11500106].(link to journal) 
  71. Diallo, M. S.; Faulon, J. L.; Goddard, W. A. III.; Johnnson, J. H. Jr.; Weber, W. J. Jr  "Molecular  Modeling of Chelsea Humic Acid: A Hierarchical Approach Based on Experimental Characterization,  Computer Assisted Structure Elucidation and Atomistic Simulations", ACS, Division of  Environmental Chemistry, Preprints of Extended Abstracts, 219th ACS National Meeting, San  Francisco, CA, March 26-30,  Vol, 40, No 1,  2000, 343-347.
  72. Diallo, M. S. ;  Cagin, T..; Faulon, J. L.; Goddard, III, W. A., Thermodynamic Properties of  Asphaltenes: A predictive Approach Based on Computer Assited Structure Elucidation and Atomistic  Simulation, Asphalts and Asphaltenes II, Development in Petroleum Science 40B, Yen, T. F.  and  Chillingiran, G. V., Edt. Elsevier, Amsterdam, 2000. 
  73. Faulon, J. L. , Automorphism Partitioning, and Canonical Labeling Can Be Solved in Polynomial- Time for Molecular Graphs, J. Chem. Inf. Comput. Sci., 1998, 38, 432-444. (link to journal) 
  74. Tokarski, J. S. ;  Hopfinger, A. J. ;  Hobbs, J. D. ; Ford, D. M. ;  Faulon, J. L., Molecular  Modeling of Polymer 17.  Simulation and QSPR Analyses of Transport Behavior in Amorphous  Polymeric Materials, Computational and Theoretical Polymer Science, 1997, 23, 199-214. 
  75. Faulon, J. L. ; Hobbs, J. D. ; Ford, D. M. ; Wilcox, R. T., Massively Parallel Simulations of  Diffusion in Dense Polymeric Structures, Proccedings SC97, 1-12,1997. (link to journal) 
  76. Faulon, J. L., Stochastic Generator of Chemical Structure. (2) Using Simulated Annealing to Search  the Space of Constitutional Isomers, J. Chem. Inf. Comput. Sci., 1996, 36, 731-740. (link to journal) 
  77. Pohl, P. I.;  Faulon, J. L.; Smith, D. M., Pore Structure of Imogolite Computer Model,  Lamgmuir, 1996, 12, 4463-4468. (link to journal) 
  78. Kowaleski, I.; Vandenbroucke, M.; Taylor, J.; Faulon, J. L.; Huc, A. , Preliminary  Results  on Molecular Modeling of Asphaltene using Structure Elucidation Programs in Conjonction  with  Molecular Simulation Programs, Energy and Fuels, 1996, 10, 97-107. (link to journal) 
  79. Kowaleski, I. ; Vandenbroucke, M. ; Faulon, J. L. ; Taylor, J. ; Behar, F. ; Huc A.,  Asphaltene Molecular Modeling of Boscan Crude Oil, Revue de l'I.F.P., 1996, 51, 161-170. 
  80. Boduszynski, M. M. ; Faulon, J. L., Molecular Structure Elucidation of Cycloalkyl- coronenes  found in Hydrocracked Oils, Proceedings of the Dhahran 1996 Lab. RandD Center  Technical  Exchange Meeting, 35-42, 1996. 
  81. Boduszynski, M. M. ;  Rechsteiner, C. E. ;  Grudoski, D. A. ;  Iwamoto, J. D. ;  Faulon J.  L., The Effect of Molecular Structure on Molecular Weight - Boiling Point Relationship for  Petroleum  Fractions, Proceedings of the Dhahran 1996 Lab. RandD Center  Technical Exchange Meeting, 23-34,  1996. 
  82. Faulon, J.L., Unraveling complex molecules, CHEMTECH, 1995,25, 16-23. 
  83. Faulon, J. L.; Loy, D. A.; Carlson, G. A.; Shea, K. J.  Computer-aided Structure  Elucidation forArylsilsesquioxane Gels, Computational Materials Science, 1995, 3,  334-346. 
  84. Pohl, P. I. ;  Faulon, J. L. ;  Smith, D. M., Molecular Dynamics Computer Simulations of  Silica  Aerogels, J. Non Cryst. Solids, 1995, 186, 349-355. 
  85. Faulon, J. L. ; Carlson, G. A., CAMD Studies of Coal Structure and Coal Liquefaction, Proceedings  of the Coal Liquefaction and Gas Conversion Contractors' Review Conference, 619-635, 1994. 
  86. Faulon, J. L., Stochastic Generator of Chemical Structure. (1) Application to the  Structure Elucidation  of Large Molecules, J. Chem. Inf. Comput. Sci., 1994, 34, 1204-1218. (.pdf) 
  87. Faulon, J. L. ;  Carlson, G.A. ;  Hatcher, P. G., A Three-Dimensional Model for Lignocellulose  from Gymnospermous Wood, Org. Geochem., 1994, 211, 1169-1179. 
  88. Faulon, J.L. ; Hatcher, P. G., Is There Any Order in the Structure of Lignin ?, Energy and Fuels,  1994, 8, 402-407. (.pdf) 
  89. Faulon, J. L. ; Mathews, J. P. ; Carlson, G. A. and Hatcher P. G., Correlation Between Microporosity and Fractal Dimension of Bituminous Coal Based on Computer-Generated  Models,  Energy and Fuels, 1994, 8, 408-414. (.pdf) 
  90. Faulon, J. L., Calculating the number averaged molecular weight (Mo) of aromatic and  hydroaromatic  clusters in coal using rubber elasticity theory, Energy and Fuels, 1994, 8, 1020-1024. 
  91. Hatcher, P. G. ; Faulon J. L., Coalification of Lignin from Vitrinite: A New Structural  Template  Based on a Helical Structure, Am. Chem. Soc. Div Fuel Chem. Preprints 39, 7-17, 1994. 
  92. Carlson, G. A. ; Faulon, J. L., Applications of Molecular Modeling in Coal Research, Am. Chem.  Soc. Div Fuel Chem. Preprints 39, 18-29, 1994.
  93. Faulon J. L. and Carlson, G. A., CAMD Studies of Coal Structure and Coal Liquefaction, Proceedings of the Coal Liquefaction and Gas Conversion Contractors' Review Conference, 619-635, 1994. 
  94. Carlson, G. A. ; Faulon, J. L. ; Pohl, P. I. ; Shelnutt, J. A., Applications of Molecular  Modeling to the Design and Characterization of Materials, Proceedings of the 93' Science and Technology Materials Conference, 12-21, 1993. 
  95. Faulon, J. L. ;  Carlson, G. A. ;  Hatcher P. G., Statistical Model for Bituminous Coal:  A Three- Dimensional Evaluation of Structural and Physical Properties Based on Computer-Generated  Structures, Energy and Fuels, 1993, 7, 1062-1072. (.pdf) 
  96. Faulon, J. L. ; Hatcher, P. G. ; Carlson, G.A. ; Wenzel K. A., A computer-aided Molecular  Model for High Volatile Bituminous Coal, Fuel Processing Technology, 1993, 34, 277-293. 
  97. Mathews, J. P. ; Scaroni, A. ; Faulon, J. L. ; Hatcher, P. G., A Structural Model for Coalified  Wood (Vitrinite) from Medium Volatile Bituminous Coal, Proceedings of the 7th International  Conference on Coal Science, 128-138, Michaeliam, K. H. Edt, 1993. 
  98. Hatcher, P. G. ;  Faulon, J. L. ;  Clifford, D. A. ;  Mathews, J. P. , A Three-dimensional  Structural Model for Humic Acids from Oxidized Soil, Proccedings of the 6th IHSS Int. Meeting, 436-446, Elsevier, Amsterdam, 1993. 
  99. Hatcher, P. G. ; Wenzel, K. A. ;  Faulon, J. L., Reaction of Wood During Early  Coalification, A  Clue to the Structure of Vitrinite, Am. Chem. Soc. Div Fuel Chem. Preprints 38, 412-419, 1993. 
  100. Faulon, J. L. ; Carlson, G. A. ; Mathews, J. P. ; Hatcher, P. G., Statistical Evaluation of  Physical Properties for Coal based on Computer-generated Models, Am. Chem. Soc. Div Fuel Chem.  Preprints 38, 420-430, 1993. 
  101. Faulon, J.L., On Using the Graph-Equivalent Classes for the Structure Elucidation of  Large  Molecules, J. Chem. Inf. Comput. Sci., 1992, 32, 338-348.(.pdf) 
  102. Hatcher, P.G ; Faulon, J.L. ; Wenzel, K. A. ; Cody, G. D., A Structural Model for  Lignin-Derived Vitrinite from High-Volatile Bituminous Coal (Coalified Wood), Energy and Fuel, 1992, 6, 813-820. (.pdf) 
  103. Faulon, J.L. ; Hatcher, P.G ; Wenzel, K. A., A Computer Assisted-Structural Elucidation for Coal Macromolecule, Am. Chem. Soc. Div. Fuel Chem. Preprints 37, 900-910, 1992. 
  104. Hatcher, P.G. ;  Faulon, J.L. ; Wenzel, K. A. ; Cody, G. D., A Three Dimensional Structural Model for Vitrinite from High Volatile Bituminous Coal, Am. Chem. Soc. Div. Fuel Chem. Preprints 37, 886-896, 1992.
  105. Faulon, J. L., Prediction Elucidation and Molecular Modeling. Algorithms and Applications in Geochemistry, Ph. D.Thesis, Edited by Ecole des Mines, Paris, 1991. 
  106. Faulon, J.L. ;  Vandenbroucke, M. ;  Drappier, J.M. ;  Behar, F. and  Romero, M., 3D Chemical Model for Geological Macromolecules, Org. Geochem., 1990, 16, 981-993. 
  107. Faulon, J.L. ; Vandenbroucke, M. ; Drappier, J.M. ; Behar, F. and Romero, M., Modeling the Chemical Structures of Sedimentary Macromolecules: The Xmol Software, Revue de l'I.F.P., 1989, 45, 161-180. 
  108. Faulon, J.L. ; Drappier, J.M. ; Bellevaux, C., Elimination des parties cachees par les  silhouettes, Revue Internationale de CFAO et d'Infographie, 1988, 3, 57-76. 


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